Environ Int 149:106411īray MA, Carpenter AE (2018) Quality control for high-throughput imaging experiments using machine learning in cellprofiler. Kornhuber M et al (2021) The E-Morph assay: identification and characterization of environmental chemicals with estrogenic activity based on quantitative changes in cell-cell contact organization of breast cancer cells. Jones TR et al (2008) CellProfiler analyst: data exploration and analysis software for complex image-based screens. Nat Methods 9(7):676–682Ĭarpenter AE et al (2006) CellProfiler: image analysis software for identifying and quantifying cell phenotypes. The text was updated successfully, but these errors were encountered: braymp added Bug labels braymp added this to the CellProfiler 2.1. Schindelin J et al (2012) Fiji: an open-source platform for biological-image analysis. Cell Res 19(2):156–172īischoff P et al (2020) Estrogens determine adherens junction organization and E-cadherin clustering in breast cancer cells via amphiregulin. Xu J, Lamouille S, Derynck R (2009) TGF-beta-induced epithelial to mesenchymal transition. Cold Spring Harb Perspect Biol 1(6):a003129 Nat Rev Mol Cell Biol 11(7):502–514īerx G, van Roy F (2009) Involvement of members of the cadherin superfamily in cancer. Also shown is a silver-stained comet example in which the percentage of DNA contained. Also, illumination correction is used to reduce background fluorescence prior to measurement. Here, the measurement of interest is the length and intensity of the comet tail. Could I ask whether you started CellProfiler by double-clicking on a pipeline or project file We think this happens sometimes when loading such files off a different drive than CellProfiler is installed on. When converting, there is a popup window that has these instructions, but I am afraid this may all-too-often be overlooked. Harris TJ, Tepass U (2010) Adherens junctions: from molecules to morphogenesis. This is a simple example of a DNA damage assay using single cell gel electrophoresis. If true, then you need to manually change this setting Select the image type in NamesAndTypes to grayscale.
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